HL_6UO1_110

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GA(PSU)UGAA(MIA)A(PSU)C

Length

11 nucleotides

Bulged bases

6UO1|1|1y|A|38

QA status

Modified nucleotides: PSU, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UO1_110 not in the Motif Atlas

Homologous match to HL_5EL4_222

Geometric discrepancy: 0.4809

The information below is about HL_5EL4_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6UO1|1|1y|G|30
6UO1|1|1y|A|31
6UO1|1|1y|PSU|32
6UO1|1|1y|U|33
6UO1|1|1y|G|34
6UO1|1|1y|A|35
6UO1|1|1y|A|36
6UO1|1|1y|MIA|37
6UO1|1|1y|A|38
6UO1|1|1y|PSU|39
6UO1|1|1y|C|40

Current chains

Chain 1y

A-site and E-site tRNAs

Nearby chains

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain 1g

30S ribosomal protein S7

Chain 1k

30S ribosomal protein S11

Chain 1v

mRNA

Chain 1x

Transfer RNA; tRNA