HL_6UO1_184
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6UO1_184 not in the Motif Atlas
- Homologous match to HL_5J7L_001
- Geometric discrepancy: 0.0845
- The information below is about HL_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6UO1|1|2a|U|12
6UO1|1|2a|U|13
6UO1|1|2a|U|14
6UO1|1|2a|G|15
6UO1|1|2a|A|16
6UO1|1|2a|U|17
6UO1|1|2a|C|18
6UO1|1|2a|C|19
6UO1|1|2a|U|20
6UO1|1|2a|G|21
6UO1|1|2a|G|22
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2e
- 30S ribosomal protein S5
- Chain 2l
- 30S ribosomal protein S12
- Chain 2v
- mRNA
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