HL_6UO1_225

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6UO1|1|1A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UO1_225 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.3746

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6UO1|1|1A|C|1064
6UO1|1|1A|U|1065
6UO1|1|1A|U|1066
6UO1|1|1A|A|1067
6UO1|1|1A|G|1068
6UO1|1|1A|A|1069
6UO1|1|1A|A|1070
6UO1|1|1A|G|1071
6UO1|1|1A|C|1072
6UO1|1|1A|A|1073
6UO1|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains