HL_6UZ7_008

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAGUGGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_008 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.345

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.2

Basepair signature

cWW-cWW

Number of instances in this motif group

3

Unit IDs

6UZ7|1|2|G|328
6UZ7|1|2|G|329
6UZ7|1|2|A|330
6UZ7|1|2|U|331
6UZ7|1|2|A|332
6UZ7|1|2|G|333
6UZ7|1|2|U|334
6UZ7|1|2|G|335
6UZ7|1|2|G|336
6UZ7|1|2|C|337
6UZ7|1|2|C|338

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8

Chain L

KLLA0A10483p