HL_6UZ7_014

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_014 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.143

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6UZ7|1|2|A|519
6UZ7|1|2|A|520
6UZ7|1|2|U|521
6UZ7|1|2|G|522
6UZ7|1|2|U|523
6UZ7|1|2|A|524
6UZ7|1|2|A|525
6UZ7|1|2|A|526
6UZ7|1|2|U|527
6UZ7|1|2|A|528
6UZ7|1|2|C|529
6UZ7|1|2|C|530
6UZ7|1|2|U|531

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24