HL_6UZ7_020

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGGUGAAAUUC

Length

12 nucleotides

Bulged bases

6UZ7|1|2|G|903

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.168

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6UZ7|1|2|G|898
6UZ7|1|2|A|899
6UZ7|1|2|G|900
6UZ7|1|2|G|901
6UZ7|1|2|U|902
6UZ7|1|2|G|903
6UZ7|1|2|A|904
6UZ7|1|2|A|905
6UZ7|1|2|A|906
6UZ7|1|2|U|907
6UZ7|1|2|U|908
6UZ7|1|2|C|909

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26