HL_6UZ7_044

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

6UZ7|1|5|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_044 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.1449

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6UZ7|1|5|U|194
6UZ7|1|5|U|195
6UZ7|1|5|G|196
6UZ7|1|5|G|197
6UZ7|1|5|A|198
6UZ7|1|5|A|199
6UZ7|1|5|C|200
6UZ7|1|5|A|201

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AY

KLLA0B05742p

Chain Be

KLLA0E06843p