HL_6UZ7_049

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_049 not in the Motif Atlas

Homologous match to HL_8C3A_010

Geometric discrepancy: 0.1024

The information below is about HL_8C3A_010

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6UZ7|1|5|A|357
6UZ7|1|5|G|358
6UZ7|1|5|U|359
6UZ7|1|5|G|360
6UZ7|1|5|A|361
6UZ7|1|5|U|362

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AC

KLLA0B07139p

Chain Bj

Ribosomal protein L37

Chain Bl

60S ribosomal protein L39