HL_6UZ7_071

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6UZ7|1|5|G|1478, 6UZ7|1|5|U|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_071 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1169

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6UZ7|1|5|A|1477
6UZ7|1|5|G|1478
6UZ7|1|5|C|1479
6UZ7|1|5|A|1480
6UZ7|1|5|G|1481
6UZ7|1|5|U|1482
6UZ7|1|5|U|1483

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AP

KLLA0A06336p

Chain AR

KLLA0E12453p