HL_6UZ7_072

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_072 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.1364

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6UZ7|1|5|G|1515
6UZ7|1|5|A|1516
6UZ7|1|5|A|1517
6UZ7|1|5|G|1518
6UZ7|1|5|C|1519
6UZ7|1|5|U|1520

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AN

Ribosomal protein L15

Chain Bj

Ribosomal protein L37