HL_6V39_014

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_014 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.0905

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6V39|1|AN1|C|461
6V39|1|AN1|G|462
6V39|1|AN1|U|463
6V39|1|AN1|G|464
6V39|1|AN1|A|465
6V39|1|AN1|G|466

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain E

50S ribosomal protein L4