HL_6V39_016

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUCG

Length

4 nucleotides

Bulged bases

6V39|1|AN1|U|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_016 not in the Motif Atlas

Geometric match to HL_5TBW_071

Geometric discrepancy: 0.1813

The information below is about HL_5TBW_071

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6V39|1|AN1|U|543
6V39|1|AN1|U|544
6V39|1|AN1|C|545
6V39|1|AN1|G|546

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L21