HL_6V39_026

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

6V39|1|AN1|U|955, 6V39|1|AN1|C|958

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_026 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.13

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|AN1|G|951
6V39|1|AN1|PSU|952
6V39|1|AN1|G|953
6V39|1|AN1|C|954
6V39|1|AN1|U|955
6V39|1|AN1|A|956
6V39|1|AN1|A|957
6V39|1|AN1|C|958
6V39|1|AN1|G|959
6V39|1|AN1|U|960

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16