HL_6V39_031

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGAGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_031 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.1917

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6V39|1|AN1|U|1217
6V39|1|AN1|G|1218
6V39|1|AN1|A|1219
6V39|1|AN1|G|1220
6V39|1|AN1|A|1221
6V39|1|AN1|A|1222

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain Q

50S ribosomal protein L21