HL_6V39_047

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

6V39|1|AN1|A|1908, 6V39|1|AN1|A|1909, 6V39|1|AN1|C|1910, 6V39|1|AN1|A|1912, 6V39|1|AN1|A|1914

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|AN1|G|1906
6V39|1|AN1|PSU|1907
6V39|1|AN1|A|1908
6V39|1|AN1|A|1909
6V39|1|AN1|C|1910
6V39|1|AN1|3TD|1911
6V39|1|AN1|A|1912
6V39|1|AN1|PSU|1913
6V39|1|AN1|A|1914
6V39|1|AN1|A|1915
6V39|1|AN1|C|1916

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain sN1

Small subunit ribosomal RNA; SSU rRNA

Chain v

Transfer RNA; tRNA