HL_6V39_049

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

6V39|1|AN1|A|2027, 6V39|1|AN1|G|2028

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_049 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.1385

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

6V39|1|AN1|G|2023
6V39|1|AN1|U|2024
6V39|1|AN1|G|2025
6V39|1|AN1|6MZ|2026
6V39|1|AN1|A|2027
6V39|1|AN1|G|2028
6V39|1|AN1|A|2029
6V39|1|AN1|U|2030
6V39|1|AN1|G|2031
6V39|1|AN1|C|2032

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain Q

50S ribosomal protein L21

Chain Z

50S ribosomal protein L32