HL_6V39_054

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGUCGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_054 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.3697

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6V39|1|AN1|G|2299
6V39|1|AN1|G|2300
6V39|1|AN1|U|2301
6V39|1|AN1|C|2302
6V39|1|AN1|G|2303
6V39|1|AN1|G|2304
6V39|1|AN1|A|2305
6V39|1|AN1|A|2306
6V39|1|AN1|A|2307
6V39|1|AN1|U|2308
6V39|1|AN1|C|2309

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5