HL_6V39_063

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_063 not in the Motif Atlas

Geometric match to HL_3E5C_001

Geometric discrepancy: 0.146

The information below is about HL_3E5C_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

6V39|1|AN1|C|2654
6V39|1|AN1|G|2655
6V39|1|AN1|A|2656
6V39|1|AN1|G|2657
6V39|1|AN1|A|2658
6V39|1|AN1|G|2659

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6