HL_6V39_067

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAGACUAG

Length

9 nucleotides

Bulged bases

6V39|1|AN1|G|2816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_067 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1261

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6V39|1|AN1|C|2815
6V39|1|AN1|G|2816
6V39|1|AN1|A|2817
6V39|1|AN1|G|2818
6V39|1|AN1|A|2819
6V39|1|AN1|C|2820
6V39|1|AN1|U|2821
6V39|1|AN1|A|2822
6V39|1|AN1|G|2823

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L17

Chain O

50S ribosomal protein L19