HL_6V39_081

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

6V39|1|sN1|U|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_081 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.3945

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6V39|1|sN1|C|415
6V39|1|sN1|U|416
6V39|1|sN1|U|417
6V39|1|sN1|A|418
6V39|1|sN1|U|419
6V39|1|sN1|G|420

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain d

30S ribosomal protein S4