HL_6V39_102

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGG(MA6)(MA6)C

Length

6 nucleotides

Bulged bases

6V39|1|sN1|G|1514

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_102 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.1141

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6V39|1|sN1|G|1512
6V39|1|sN1|G|1513
6V39|1|sN1|G|1514
6V39|1|sN1|MA6|1515
6V39|1|sN1|MA6|1516
6V39|1|sN1|C|1517

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain AN1

Large subunit ribosomal RNA; LSU rRNA