HL_6V39_103
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CAGUUGG(H2U)UAG
- Length
- 11 nucleotides
- Bulged bases
- 6V39|1|v|U|16, 6V39|1|v|U|17, 6V39|1|v|G|18, 6V39|1|v|G|19, 6V39|1|v|U|21
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6V39_103 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.3394
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
6V39|1|v|C|13
6V39|1|v|A|14
6V39|1|v|G|15
6V39|1|v|U|16
6V39|1|v|U|17
6V39|1|v|G|18
6V39|1|v|G|19
6V39|1|v|H2U|20
6V39|1|v|U|21
6V39|1|v|A|22
6V39|1|v|G|23
Current chains
- Chain v
- tRNA-met
Nearby chains
- Chain AN1
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
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