HL_6V39_105
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- G(5MU)(PSU)CAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6V39_105 not in the Motif Atlas
- Homologous match to HL_2AKE_003
- Geometric discrepancy: 0.515
- The information below is about HL_2AKE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33239.1
- Basepair signature
- cWW-R-R-tWH-R-R-R
- Number of instances in this motif group
- 98
Unit IDs
6V39|1|v|G|54
6V39|1|v|5MU|55
6V39|1|v|PSU|56
6V39|1|v|C|57
6V39|1|v|A|58
6V39|1|v|A|59
6V39|1|v|G|60
6V39|1|v|U|61
6V39|1|v|C|62
Current chains
- Chain v
- tRNA-met
Nearby chains
- Chain AN1
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5
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