HL_6V3A_033

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

6V3A|1|AN1|U|1320, 6V3A|1|AN1|U|1324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3A_033 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1488

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6V3A|1|AN1|G|1319
6V3A|1|AN1|U|1320
6V3A|1|AN1|U|1321
6V3A|1|AN1|A|1322
6V3A|1|AN1|A|1323
6V3A|1|AN1|U|1324
6V3A|1|AN1|C|1325

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain R

50S ribosomal protein L22