HL_6V3A_082

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6V3A|1|sN1|U|463

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3A_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3425

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6V3A|1|sN1|G|458
6V3A|1|sN1|U|459
6V3A|1|sN1|U|460
6V3A|1|sN1|A|461
6V3A|1|sN1|A|462
6V3A|1|sN1|U|463
6V3A|1|sN1|A|464
6V3A|1|sN1|C|465
6V3A|1|sN1|C|466

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains