3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
CUAACG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V3A_089 not in the Motif Atlas
Homologous match to HL_4LFB_019
Geometric discrepancy: 0.1114
The information below is about HL_4LFB_019
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6V3A|1|sN1|C|859
6V3A|1|sN1|U|860
6V3A|1|sN1|A|861
6V3A|1|sN1|A|862
6V3A|1|sN1|C|863
6V3A|1|sN1|G|864

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain e
30S ribosomal protein S5
Chain h
30S ribosomal protein S8

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0662 s