HL_6V3A_103

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGUUGG(H2U)UAG

Length

11 nucleotides

Bulged bases

6V3A|1|v|U|16, 6V3A|1|v|U|17, 6V3A|1|v|G|18, 6V3A|1|v|G|19, 6V3A|1|v|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3A_103 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.3302

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6V3A|1|v|C|13
6V3A|1|v|A|14
6V3A|1|v|G|15
6V3A|1|v|U|16
6V3A|1|v|U|17
6V3A|1|v|G|18
6V3A|1|v|G|19
6V3A|1|v|H2U|20
6V3A|1|v|U|21
6V3A|1|v|A|22
6V3A|1|v|G|23

Current chains

Chain v

tRNA-met

Nearby chains

Chain AN1

Large subunit ribosomal RNA; LSU rRNA