HL_6V3B_082

3D structure

PDB id

6V3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6V3B|1|sN1|U|463

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3B_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3501

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6V3B|1|sN1|G|458
6V3B|1|sN1|U|459
6V3B|1|sN1|U|460
6V3B|1|sN1|A|461
6V3B|1|sN1|A|462
6V3B|1|sN1|U|463
6V3B|1|sN1|A|464
6V3B|1|sN1|C|465
6V3B|1|sN1|C|466

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains