3D structure

PDB id
6V3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GUUAAUACC
Length
9 nucleotides
Bulged bases
6V3E|1|sN1|U|463
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V3E_012 not in the Motif Atlas
Homologous match to HL_5J7L_012
Geometric discrepancy: 0.3305
The information below is about HL_5J7L_012
Detailed Annotation
GNRA wlth extra near cWW
Broad Annotation
GNRA wlth extra near cWW
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

6V3E|1|sN1|G|458
6V3E|1|sN1|U|459
6V3E|1|sN1|U|460
6V3E|1|sN1|A|461
6V3E|1|sN1|A|462
6V3E|1|sN1|U|463
6V3E|1|sN1|A|464
6V3E|1|sN1|C|465
6V3E|1|sN1|C|466

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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