HL_6VLZ_040

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

6VLZ|1|AA|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VLZ_040 not in the Motif Atlas

Geometric match to HL_5J7L_001

Geometric discrepancy: 0.2447

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VLZ|1|AA|U|654
6VLZ|1|AA|U|655
6VLZ|1|AA|U|656
6VLZ|1|AA|G|657
6VLZ|1|AA|G|658
6VLZ|1|AA|U|659
6VLZ|1|AA|C|660
6VLZ|1|AA|C|661
6VLZ|1|AA|U|662
6VLZ|1|AA|A|663
6VLZ|1|AA|G|664

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial