HL_6VLZ_047

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CCACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VLZ_047 not in the Motif Atlas

Geometric match to HL_4ZT0_006

Geometric discrepancy: 0.3559

The information below is about HL_4ZT0_006

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6VLZ|1|AA|C|894
6VLZ|1|AA|C|895
6VLZ|1|AA|A|896
6VLZ|1|AA|C|897
6VLZ|1|AA|C|898
6VLZ|1|AA|G|899

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AJ

28S ribosomal protein S12, mitochondrial

Chain AO

28S ribosomal protein S18b, mitochondrial