HL_6VLZ_053

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

6VLZ|1|AA|U|1219, 6VLZ|1|AA|A|1220, 6VLZ|1|AA|A|1221, 6VLZ|1|AA|A|1222, 6VLZ|1|AA|C|1224, 6VLZ|1|AA|C|1225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VLZ_053 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1381

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6VLZ|1|AA|G|1217
6VLZ|1|AA|A|1218
6VLZ|1|AA|U|1219
6VLZ|1|AA|A|1220
6VLZ|1|AA|A|1221
6VLZ|1|AA|A|1222
6VLZ|1|AA|C|1223
6VLZ|1|AA|C|1224
6VLZ|1|AA|C|1225
6VLZ|1|AA|C|1226

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AG

28S ribosomal protein S9, mitochondrial

Chain AH

28S ribosomal protein S10, mitochondrial