HL_6VLZ_063

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUAAAAGAG

Length

9 nucleotides

Bulged bases

6VLZ|1|A|A|1935, 6VLZ|1|A|A|1936, 6VLZ|1|A|A|1937, 6VLZ|1|A|G|1939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VLZ_063 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.2639

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6VLZ|1|A|C|1933
6VLZ|1|A|U|1934
6VLZ|1|A|A|1935
6VLZ|1|A|A|1936
6VLZ|1|A|A|1937
6VLZ|1|A|A|1938
6VLZ|1|A|G|1939
6VLZ|1|A|A|1940
6VLZ|1|A|G|1941

Current chains

Chain A

16s rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain A3

Aurora kinase A-interacting protein

Chain D

39S ribosomal protein L2, mitochondrial