HL_6VMI_008
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- UGUAGCAAAA
- Length
- 10 nucleotides
- Bulged bases
- 6VMI|1|A|A|1957, 6VMI|1|A|A|1961, 6VMI|1|A|A|1962
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VMI_008 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.3647
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
6VMI|1|A|U|1954
6VMI|1|A|G|1955
6VMI|1|A|U|1956
6VMI|1|A|A|1957
6VMI|1|A|G|1958
6VMI|1|A|C|1959
6VMI|1|A|A|1960
6VMI|1|A|A|1961
6VMI|1|A|A|1962
6VMI|1|A|A|1963
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain E
- 39S ribosomal protein L3, mitochondrial
- Chain T
- 39S ribosomal protein L22, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
Coloring options: