HL_6VMI_022

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AGCAUCACCAGUAUU

Length

15 nucleotides

Bulged bases

6VMI|1|A|A|2521, 6VMI|1|A|C|2523, 6VMI|1|A|A|2524, 6VMI|1|A|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VMI|1|A|A|2518
6VMI|1|A|G|2519
6VMI|1|A|C|2520
6VMI|1|A|A|2521
6VMI|1|A|U|2522
6VMI|1|A|C|2523
6VMI|1|A|A|2524
6VMI|1|A|C|2525
6VMI|1|A|C|2526
6VMI|1|A|A|2527
6VMI|1|A|G|2528
6VMI|1|A|U|2529
6VMI|1|A|A|2530
6VMI|1|A|U|2531
6VMI|1|A|U|2532

Current chains

Chain A

16s rRNA

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial