HL_6VMI_040

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

6VMI|1|AA|U|655, 6VMI|1|AA|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_040 not in the Motif Atlas

Geometric match to HL_5J7L_001

Geometric discrepancy: 0.3593

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VMI|1|AA|U|654
6VMI|1|AA|U|655
6VMI|1|AA|U|656
6VMI|1|AA|G|657
6VMI|1|AA|G|658
6VMI|1|AA|U|659
6VMI|1|AA|C|660
6VMI|1|AA|C|661
6VMI|1|AA|U|662
6VMI|1|AA|A|663
6VMI|1|AA|G|664

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A5

mRNA

Chain AD

28S ribosomal protein S5, mitochondrial