HL_6VMI_042

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UCACCACGA

Length

9 nucleotides

Bulged bases

6VMI|1|AA|C|737

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_042 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.2036

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6VMI|1|AA|U|733
6VMI|1|AA|C|734
6VMI|1|AA|A|735
6VMI|1|AA|C|736
6VMI|1|AA|C|737
6VMI|1|AA|A|738
6VMI|1|AA|C|739
6VMI|1|AA|G|740
6VMI|1|AA|A|741

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial