HL_6VMI_046

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

6VMI|1|AA|A|844, 6VMI|1|AA|A|845, 6VMI|1|AA|A|846

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_046 not in the Motif Atlas

Geometric match to HL_4PQV_001

Geometric discrepancy: 0.3855

The information below is about HL_4PQV_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6VMI|1|AA|C|842
6VMI|1|AA|G|843
6VMI|1|AA|A|844
6VMI|1|AA|A|845
6VMI|1|AA|A|846
6VMI|1|AA|G|847

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AO

28S ribosomal protein S18b, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial