HL_6VMI_054

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

6VMI|1|AA|A|1283, 6VMI|1|AA|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VMI_054 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1821

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

6VMI|1|AA|U|1281
6VMI|1|AA|G|1282
6VMI|1|AA|A|1283
6VMI|1|AA|U|1284
6VMI|1|AA|G|1285
6VMI|1|AA|A|1286
6VMI|1|AA|A|1287

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AB

28S ribosomal protein S2, mitochondrial

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AE

28S ribosomal protein S6, mitochondrial

Chain AS

28S ribosomal protein S23, mitochondrial