HL_6VU3_019

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_019 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2008

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6VU3|1|D|G|521
6VU3|1|D|C|522
6VU3|1|D|A|523
6VU3|1|D|G|524
6VU3|1|D|C|525
6VU3|1|D|C|526
6VU3|1|D|C|528

Current chains

Chain D

16S rRNA

Nearby chains

Chain 7

mRNA with 12 nt long spacer

Chain R

30S ribosomal protein S12