HL_6VU3_031

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

6VU3|1|D|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_031 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.1519

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6VU3|1|D|G|1134
6VU3|1|D|U|1135
6VU3|1|D|C|1136
6VU3|1|D|C|1137
6VU3|1|D|G|1138
6VU3|1|D|G|1139
6VU3|1|D|C|1140

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S9