3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VU3_034 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.0727
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6VU3|1|D|C|1314
6VU3|1|D|U|1315
6VU3|1|D|G|1316
6VU3|1|D|C|1317
6VU3|1|D|A|1318
6VU3|1|D|A|1319
6VU3|1|D|C|1320
6VU3|1|D|U|1321
6VU3|1|D|C|1322
6VU3|1|D|G|1323

Current chains

Chain D
16S rRNA

Nearby chains

Chain S
30S ribosomal protein S14
Chain W
30S ribosomal protein S19
Chain X
30S ribosomal protein S13

Coloring options:


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