3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAAUAG
Length
7 nucleotides
Bulged bases
6VU3|1|a|U|615
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VU3_055 not in the Motif Atlas
Homologous match to HL_5J7L_151
Geometric discrepancy: 0.087
The information below is about HL_5J7L_151
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_80922.2
Basepair signature
cWW-tSH-F
Number of instances in this motif group
3

Unit IDs

6VU3|1|a|C|611
6VU3|1|a|G|612
6VU3|1|a|A|613
6VU3|1|a|A|614
6VU3|1|a|U|615
6VU3|1|a|A|616
6VU3|1|a|G|617

Current chains

Chain a
23S rRNA

Nearby chains

Chain l
50S ribosomal protein L4

Coloring options:


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