HL_6VU3_060

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6VU3|1|a|A|781, 6VU3|1|a|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_060 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0804

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

6VU3|1|a|U|779
6VU3|1|a|G|780
6VU3|1|a|A|781
6VU3|1|a|A|782
6VU3|1|a|A|783
6VU3|1|a|G|784
6VU3|1|a|G|785

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2