HL_6VU3_063

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGCUAACGU

Length

9 nucleotides

Bulged bases

6VU3|1|a|U|958, 6VU3|1|a|C|961

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_063 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.0555

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VU3|1|a|G|954
6VU3|1|a|G|956
6VU3|1|a|C|957
6VU3|1|a|U|958
6VU3|1|a|A|959
6VU3|1|a|A|960
6VU3|1|a|C|961
6VU3|1|a|G|962
6VU3|1|a|U|963

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

5S ribosomal RNA; 5S rRNA

Chain v

50S ribosomal protein L16