HL_6VU3_073

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6VU3|1|a|A|1453, 6VU3|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_073 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1158

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6VU3|1|a|C|1451
6VU3|1|a|G|1452
6VU3|1|a|A|1453
6VU3|1|a|C|1454
6VU3|1|a|G|1455
6VU3|1|a|G|1456
6VU3|1|a|U|1457
6VU3|1|a|U|1458
6VU3|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L17