HL_6VU3_087

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAGAUGC

Length

9 nucleotides

Bulged bases

6VU3|1|a|A|2031, 6VU3|1|a|G|2032

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_087 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1105

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6VU3|1|a|G|2027
6VU3|1|a|U|2028
6VU3|1|a|G|2029
6VU3|1|a|A|2031
6VU3|1|a|G|2032
6VU3|1|a|A|2033
6VU3|1|a|U|2034
6VU3|1|a|G|2035
6VU3|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

50S ribosomal protein L32

Chain j

50S ribosomal protein L3