HL_6VU3_103

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6VU3|1|a|G|2751, 6VU3|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_103 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1115

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

6VU3|1|a|C|2745
6VU3|1|a|U|2746
6VU3|1|a|G|2747
6VU3|1|a|A|2748
6VU3|1|a|A|2749
6VU3|1|a|A|2750
6VU3|1|a|G|2751
6VU3|1|a|C|2752
6VU3|1|a|A|2753
6VU3|1|a|U|2754
6VU3|1|a|C|2755
6VU3|1|a|U|2756
6VU3|1|a|A|2757
6VU3|1|a|A|2758
6VU3|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L6

Chain q

50S ribosomal protein L36

Chain s

50S ribosomal protein L13