HL_6VU3_105
3D structure
- PDB id
- 6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAGACGAC
- Length
- 9 nucleotides
- Bulged bases
- 6VU3|1|a|A|2820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VU3_105 not in the Motif Atlas
- Homologous match to HL_5J7L_201
- Geometric discrepancy: 0.0655
- The information below is about HL_5J7L_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.6
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6VU3|1|a|G|2819
6VU3|1|a|A|2820
6VU3|1|a|A|2821
6VU3|1|a|G|2822
6VU3|1|a|A|2823
6VU3|1|a|C|2824
6VU3|1|a|G|2825
6VU3|1|a|A|2826
6VU3|1|a|C|2827
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain j
- 50S ribosomal protein L3
- Chain w
- 50S ribosomal protein L17
Coloring options: