3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GAAGACGAC
Length
9 nucleotides
Bulged bases
6VU3|1|a|A|2820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VU3_105 not in the Motif Atlas
Homologous match to HL_5J7L_201
Geometric discrepancy: 0.0655
The information below is about HL_5J7L_201
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.6
Basepair signature
cWW-cSW-F-F-F-F
Number of instances in this motif group
9

Unit IDs

6VU3|1|a|G|2819
6VU3|1|a|A|2820
6VU3|1|a|A|2821
6VU3|1|a|G|2822
6VU3|1|a|A|2823
6VU3|1|a|C|2824
6VU3|1|a|G|2825
6VU3|1|a|A|2826
6VU3|1|a|C|2827

Current chains

Chain a
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L3
Chain w
50S ribosomal protein L17

Coloring options:


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