HL_6VWL_002

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6VWL|1|1|A|160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_002 not in the Motif Atlas

Homologous match to HL_6CZR_074

Geometric discrepancy: 0.5121

The information below is about HL_6CZR_074

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6VWL|1|1|G|158
6VWL|1|1|G|159
6VWL|1|1|A|160
6VWL|1|1|A|161
6VWL|1|1|A|162
6VWL|1|1|C|163

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L19

Chain s

30S ribosomal protein S20